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Friday, March 06, 2009 - 5:56 AM
Louis J. Sheehan, Esquire. The high-flying Landsat 5 celebrated a quarter-century in orbit March
1 by snapping an image of Alaska’s Redoubt Volcano, a peak that’s been
rumbling and threatening to erupt since November 2008. http://louisdjdsheehan.blogspot.com
Since its
launch in 1984, the VW Beetle-sized craft has circled Earth at an
altitude of about 700 kilometers more than 130,000 times — once every
99 minutes, says Kristi Kline, program manager for Landsat at the U.S.
Geological Survey’s Center for Earth Resources Observation and Science
in Sioux Falls, S.D. Sensors on the polar-orbiting craft collect
data at seven different wavelengths from near ultraviolet to the far
infrared. Except for central Antarctica and far northern Greenland, the
satellite passes over each spot on land once every 16 days, and can
distinguish features as small as 30 meters across, Kline notes. http://louisdjdsheehan.blogspot.com
Besides
providing before-and-after shots of landscapes that have suffered
natural disasters such as volcanic eruptions, floods, tsunamis or
hurricanes, the archive of Landsat data — 2.3 million images strong and
gathered since Landsat 1 launched in 1972 — also chronicles the effects
of human activity such as urban sprawl and deforestation. Louis J. Sheehan, Esquire.
So why
has Landsat 5, originally designed to operate just three years, lasted
so long? In part, because the craft was designed with extra fuel
capacity so it could occasionally be brought to lower orbit and
serviced by astronauts onboard the space shuttle — a feature that
hasn’t been used. The fuel instead has served to keep the satellite in
orbit and oriented properly. “That, plus some really good engineering
and a lot of luck,” Kline adds.
Hitting “print” is easy. Getting a perfect printout is not. All too
often, inkjet printers spew out smudged or smeared pages. Now, a new
study of the physics of ink concludes that the culprit is the gloopiest
ink. Inkjet printers have a tiny nozzle, or inkjet, that squirts
droplets of ink onto the paper as it passes through. Ideally, the ink
forms into a perfect round droplet as it launches from the inkjet,
hitting the paper right on target. But droplet formation is affected by
ink properties including density, surface tension and viscosity, which
is the measure of resistance to flow or “gloopiness.” And if the
droplets aren’t just right, a splotch appears instead of a crisp line
of text, the researchers say. Scientists use a ratio called the Z
number to describe the surface tension and viscosity of a particular
ink. Inks with lower Z are more viscous, while inks with higher Z have
more surface tension, explains material scientist and study coauthor
Jooho Moon of Yonsei University in Seoul, Korea. Recent
theoretical work found that the most printable inks would have Z values
between one and 10. But the new research suggests the best droplets
form from inks with Z values between four and 14, Moon and his
colleagues report in the March 3 Langmuir. That means, of the inks now in common use, the more free-flowing ones print better, Moon says. “A
kind of balance is what is needed for the most printable inks,”
explains material scientist Damien Vadillo of the University of
Cambridge in England. When ink is launched from the inkjet, a
teardrop-shaped ball hurtles toward the paper. The teardrop elongates
until a tail of ink, called a filament, stretches away like the tail of
a comet. In the study, researchers captured images of the
droplets of different types of lab-made inks, up to a Z score of 17.
Inks with Z values above 14 had filaments that easily broke away from
the ink drop, forming a secondary ink drop that created a smear.
Droplets of inks with Z values below 14 held together better, and the
viscosity of the ink pulled the filament back into the droplet. But
droplets of very viscous inks with Z values below four stuck to the
inkjet instead of launching properly, the scientists note. The
researchers acknowledge in the paper that the work only tested ink on
one printer, and the best Z values could vary slightly depending on how
far a printer’s inkjet is from the paper’s surface. Despite the
new range of Z values, it’s not necessary to rush out to purchase new
ink cartridges. The study’s conclusion “is not really a big surprise,
just refining what we already knew,” Vadillo says. But
understanding the properties of the most printable inks will help in
future printer and ink design. And inkjet printers are useful for more
than desktop publishing. http://louisdjdsheehan.blogspot.com “Droplets of chemicals could be printed onto a
substrate, then we could test thousands of different reactions at
once,” Vadillo speculates. “Understanding how to make the chemicals
into good ‘inks’ will help us to do that.” http://louisdjdsheehan.blogspot.com
Horse domestication traced to ancient central Asian culture
Bone and chemical analyses indicate horses were harnessed and even milked more than 5,000 years ago in central Asia
Web edition
: Thursday, March 5th, 2009
 Text Size
 A
horse's tooth found at an ancient settlement in Kazakhstan displays
parallel bands of wear (at left) typically produced by bits held in the
mouths of bridled animals, researchers say.Science/AAAS Central
Asia’s vast grasslands hosted a prehistoric revolution in
transportation, communication and warfare, thanks to the humble horse.
Remains from Kazakhstan’s more than 5,000-year-old Botai culture have
yielded the earliest direct evidence for domestication of these
versatile beasts, scientists report. The Botai people were
hunter-gatherers who lived in large settlements for months or years.
Their culture lasted from 5,600 to 5,100 years ago. Researchers have
long suspected that the Botai rode domesticated horses while hunting
for wild horses to eat but did not domesticate other animals or
cultivate crops. Butchered horse remains found at four Botai
sites include two tell-tale signs of domestication: slender lower-leg
bones like those of later domesticated horses and cheek teeth worn down
by bits that attached to bridles or similar restraints, says a team led
by archaeologist Alan Outram of the University of Exeter, England. Chemical
analyses of animal fat residue on the inside surfaces of Botai pottery
fragments suggest that the vessels had once held mare’s milk, probably
gathered in summer months, the researchers report in the March 6 Science. Modern Kazakh horse herders milk mares in the summer to produce a fermented, alcoholic drink called koumiss.  A
villager in northern Kazakhstan milks a mare, much as members of the
Botai culture must have done more than 5,000 years ago, a new study
concludes.
A. Outram Milking
of horses and other animals arose in areas, such as northern
Kazakhstan, that lacked agricultural practices often regarded as
precursors of milking, Outram and his colleagues propose. “This is certainly the earliest culture by some margin with such compelling evidence for domesticated horses,” Outram says. The
new report presents the first evidence for horse milk in Botai pots and
for Botai horses having domesticated-looking leg bones, remark David
Anthony and Dorcas Brown, archaeologists who teach at Hartwick College
in Oneonta, N.Y., who study the origins of horse domestication. “If
you’re milking horses, they are not wild,” Anthony says. Outram’s
group compared 18 lower-leg bones from Botai horses, excavated in 2005
and 2006, to corresponding bones already excavated by others at sites
of the nearby, roughly 5,000-year-old Tersek culture. Comparisons were
also made to leg bones from modern and 3,000-year-old domesticated
horses and from wild Siberian horses that lived more than 20,000 years
ago. Botai horses displayed the relatively slender legs of domesticated
animals. Tersek horses’ legs looked more like those of wild horses. Additionally,
one Botai horse molar displayed deep, parallel grooves typically
observed on the molars of domesticated horses that hold bits in their
mouths, Outram says. Bits may also have produced less-pronounced tooth
wear on two other Botai horses. Evidence of bone damage and regrowth
appeared on four Botai horses’ jaws where bits or bridles would have
rubbed through gums. The evidence of bit use described by
Outram’s team is interesting but preliminary, according to Anthony and
Brown. Researchers are still debating whether other proposed signs of
bit damage on Botai horses’ teeth, reported by Anthony and Brown in
1989, might instead have resulted from natural causes. The Botai
people didn’t invent horse domestication and milking, Anthony and Brown
propose. These practices were borrowed from inhabitants of the nearby
Russian steppes, who included possibly domesticated horses in
sacrificial rituals with domesticated sheep and cattle by 6,500 years
ago, they say. Those Botai neighbors probably domesticated horses after
learning about cattle and sheep domestication from farming groups, in
Anthony and Brown’s view.
If copying is the sincerest form of flattery, then journals are
publishing a lot of amazingly flattering science. Of course to most of
us, the authors of such reports would best be labeled plagiarists — and
warrant censure, not praise. But Harold R. Garner and his
colleagues at the University of Texas Southwestern Medical Center at
Dallas aren’t calling anybody names. They’re just posting a large and
growing bunch of research papers — pairs of them — onto the Internet
and highlighting patches in each that are identical. Says Garner:
“We’re pointing out possible plagiarism. You be the judge.” But this
physicist notes that in terms of wrong-doing, authors of the newest
paper in most pairs certainly appear to have been “caught with their
hands in the cookie jar.” Garner's team developed data-mining
software about eight years ago that allows a resarcher to input lots of
text — the entire abstract of a paper, for instance — and ask the
program to compare it to everything posted on a database. Such as the
National Library of Medicine's MEDLINE, which abstracts all major
biomedical journal articles. The software then looks for matches to
words, phrases, numbers — anything, and pulls up matches that are
similar. The idea: to help scientists find papers that offer similar
findings, contradictions, even speculations that might suggest
promising new directions in a given research field. Early on,
Garner says, his team realized this software also had the potential for
highlighting potential plagiarism. But that was not their first
priority. In fact, his group didn't really begin looking in earnest for
signs of copycatting until about two years ago. Today, Garner’s group has published a short paper in Science on
results of a survey it conducted among authors of pairs of remarkably
similar papers (identified from MEDLINE), and the editors who published
those papers. The Texas team wanted to find out whether the apparent
copycats — not only the authors but also the editors who published
their work — would own up to plagiarism. And once confronted with this
public finger pointing, what would they do about it? The real
surprise, says Garner — indeed, “the shock” — was that so few authors
of the initial papers were aware of the copycat’s antics. Prior to
emailing PDFs that highlighted identical passages in each set of paired
papers, 93 percent said they had been unaware of the newer paper. Since
those newer papers were all available via MEDLINE searches, they should
have come up every time authors of the first paper searched for work on
topics related to their own. In fact, Garner points out, because
MEDLINE posts search results in reverse chronological order, copycatted
papers should turn up before the papers on which they had been based. To
date, 83 of the 212 pairs of largely identical papers identified so far
by the data-mining software that Garner’s team has developed have
triggered formal investigations by the journals involved. In 46
instances, editors of the second papers have issued retractions.
However, what constitutes a retraction varied considerably. It might
have been broad publication of problems with the offending second paper
— both in the journal and in a notice sent to MEDLINE. Other
times, some website might have acknowledged the retraction of some or
all of a paper, with no notification of the problem forwarded to
MEDLINE. In such cases, Garner notes, anyone using MEDLINE's search
function would get no warning that the abstract it pulled up relates to
findings that have been discredited. Have you ever shared this
material on apparent plagiarism with the administrators of the second
paper's authors, I asked Garner. "No, that would have put us into this
situation where we would be acting more as police or an investigatory
body," he said. And they're not anxious to serve as honesty cops. Too bad. So
far, his team's software has turned up more than 9,000 'highly similar'
papers in biomedical journals indexed by MEDLINE. And only 212 are
copycats? Actually, Garner says, that estimate is probably way low. Of
that big number, "We have only gotten through looking at 212 so far."
Their investigations continue. For more on the implications of such copycatting, check out my next post.
A standard chemotherapy drug may make a small but aggressive
population of brain cancer cells even more deadly, a study in the March
6 Cell Stem Cell reports. Understanding how these cells turn dangerous may ultimately lead to better ways to destroy brain tumors.
“This really shows how important it is that we have therapies
against different populations of cells,” says Anders Persson of the
University of California, San Francisco, who coauthored a commentary in
the same issue of Cell Stem Cell. “You can’t just give one treatment and think it will kill every cell.”
The most common cancer originating in adults’ brains — glioblastoma
multiforme — is particularly complex and notoriously resistant to
standard treatments. The resistance may be caused by small numbers of
cancer cells called side populations, says Eric Holland, a neurosurgeon
at Memorial Sloan-Kettering Cancer Center in New York City and coauthor
of the new study.
The new study finds that these side population cells make up only 4
to 8 percent of all cells of a mouse brain tumor. And the cells may be
able to produce multiple types of cancerous cells with different
properties and rebuild the entire tumor from the ground up, like the
noncancerous stem cells that can create entire organs.
Currently, a drug called temozolomide is the first-line treatment
for glioblastoma in humans. When brain tumors are treated with
temozolomide, many cancerous cells die, but the side populations live
on in greater numbers, the new study shows. When treated with the drug,
side populations of mouse cancer cells grew to make up as much as 30
percent of all cancerous cells, Holland and his team found.
When researchers applied temozolomide to mouse cancer cells lacking a known cancer-preventing gene PTEN, the side population cells made up 75 percent of all cancer cells.
The new work supports the idea that “the treatment we throw at
tumors” affects these small but dangerous populations of cancer cells,
comments William Weiss, a neurologist at the University of California,
San Francisco who coauthored the Cell Stem Cell commentary.
The researchers also tested temozolomide’s effects on how quickly
tumors from side populations grow. On average, tumors formed after 25
days in cancer-free mice that were implanted with temozolomide-treated
side population cells, while untreated cells took more than 40 days to
grow into tumors.
Temozolomide may select for the most aggressive of the already aggressive side population cells, Holland suggests.
“The few cells that survive come roaring back and kill the patient.”
But he does not advocate changing treatments: “It’s very clear that
with temozolomide, patients survive longer.”
Whether these side populations of cancer cells are truly stem cells,
with the capacity to grow back a complex cancer, is still unclear. The
notion is “a very attractive hypothesis” that may help explain why
chemotherapy treatments don’t always cure cancer, says Weiss. Louis J. Sheehan, Esquire
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